X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Resource Report

Resource Name
Bioconductor
RRID:SCR_006442 RRID Copied      
PDF Report How to cite 
Bioconductor (RRID:SCR_006442)
Copy Citation Copied
Resource Information

URL: http://www.bioconductor.org/

Proper Citation: Bioconductor (RRID:SCR_006442)

Description: Software repository for R packages related to analysis and comprehension of high throughput genomic data. Uses separate set of commands for installation of packages. Software project based on R programming language that provides tools for analysis and comprehension of high throughput genomic data.

Resource Type: software repository, software resource, software toolkit

Defining Citation: PMID:15461798

Keywords: catalog, analysis, genomic, metadata, comprehension, statistical, data

Funding: Catt Family Foundation ; Dana Farber Cancer Institute ; NHGRI R33 HG002708

Availability: Free, Freely available

Resource Name: Bioconductor

Resource ID: SCR_006442

Expand All
This resource

lists

MSstats

lists

MetaCyto

lists

MetaNeighbor

lists

tximport

lists

clusterProfiler

lists

ropls

lists

FlowSOM

lists

scran

lists

Rsubread

lists

riboSeqR

lists

Biostrings

lists

ConsensusClusterPlus

lists

DESeq2

lists

GenomicFeatures

lists

affy

lists

affydata

lists

Genomic Ranges

lists

Goseq

lists

GAGE

lists

CATALYST

lists

Scmap

lists

Scfind

lists

GenomicRanges

lists

org.Rn.eg.db

lists

Extending Guilt by Association by Degree

lists

ggtree

lists

StructuralVariantAnnotation

lists

scTHI

lists

EnhancedVolcano

lists

DEGreport

lists

variancePartition

lists

biomaRt

lists

MSnbase

lists

ReactomePA

lists

SynergyFinder

lists

CiteFuse

lists

fgsea

lists

GSVA

lists

SimFFPE

lists

FilterFFPE

lists

PhenStat

lists

ChIPseeker

lists

AUCell

lists

svaNUMT

lists

KEGGgraph

lists

epialleleR

lists

microbiome

lists

Orthology.eg.db

lists

org.Hs.eg.db

lists

ExperimentHub

lists

combi

is listed by

OMICtools

is listed by

Gene Ontology Tools

is listed by

SoftCite

is affiliated with

RnaSeqGeneEdgeRQL

is related to

asSeq

is related to

Gene Ontology

is related to

CRCView

is related to

R Project for Statistical Computing

is related to

GEO2R

is related to

LIMMA

is related to

VisR

is related to

edgeR

is related to

IMEx - The International Molecular Exchange Consortium

is related to

CATALYSTLite

is related to

ascend

is related to

minet

has parent organization

Fred Hutchinson Cancer Center

is parent organization of

ncdfFlow

is parent organization of

GenomicRanges

is parent organization of

ReadqPCR

is parent organization of

flowCL

is parent organization of

flowBin

is parent organization of

CorMut

is parent organization of

metaSeq

is parent organization of

VariantAnnotation

is parent organization of

ReQON

is parent organization of

timecourse

is parent organization of

RmiR.Hs.miRNA

is parent organization of

AffyRNADegradation

is parent organization of

ArrayExpress (R)

is parent organization of

GEOquery

is parent organization of

MIMOSA

is parent organization of

HEM

is parent organization of

CNTools

is parent organization of

cn.FARMS

is parent organization of

Clonality

is parent organization of

TransView

is parent organization of

pvac

is parent organization of

QUALIFIER

is parent organization of

flowStats

is parent organization of

rTANDEM

is parent organization of

flowFlowJo

is parent organization of

iASeq

is parent organization of

OLINgui

is parent organization of

SigFuge

is parent organization of

Rdisop

is parent organization of

GeneExpressionSignature

is parent organization of

iBMQ

is parent organization of

TDARACNE

is parent organization of

flowQ

is parent organization of

FlipFlop

is parent organization of

RmiR

is parent organization of

bsseq

is parent organization of

ExomePeak

is parent organization of

flowWorkspace

is parent organization of

massiR

is parent organization of

rbsurv

is parent organization of

GeneMeta

is parent organization of

MergeMaid

is parent organization of

categoryCompare

is parent organization of

metahdep

is parent organization of

snpStats: SnpMatrix and XSnpMatrix classes and methods

is parent organization of

CNVtools

is parent organization of

CGEN

is parent organization of

RCASPAR

is parent organization of

iterativeBMAsurv

is parent organization of

multtest

is parent organization of

globaltest

is parent organization of

MinimumDistance

is parent organization of

VegaMC

is parent organization of

VanillaICE

is parent organization of

SNPchip

is parent organization of

SMAP

is parent organization of

quantsmooth

is parent organization of

mBPCR

is parent organization of

ITALICS

is parent organization of

GenoSet

is parent organization of

exomeCopy

is parent organization of

CGHregions

is parent organization of

CGHbase

is parent organization of

beadarraySNP

is parent organization of

GLAD

is parent organization of

methylMnM

is parent organization of

methyAnalysis

is parent organization of

ARRmNormalization

is parent organization of

ChIPsim

is parent organization of

yaqcaffy

is parent organization of

wateRmelon

is parent organization of

sRAP

is parent organization of

spotSegmentation

is parent organization of

SNM

is parent organization of

SNAGEE

is parent organization of

Simpleaffy

is parent organization of

qcmetrics

is parent organization of

MANOR

is parent organization of

limmaGUI

is parent organization of

ffpe

is parent organization of

dyebias

is parent organization of

DEXUS

is parent organization of

BeadDataPackR

is parent organization of

aroma.light

is parent organization of

ArrayTools

is parent organization of

beadarray

is parent organization of

arrayQuality

is parent organization of

arrayMvout

is parent organization of

affyQCReport

is parent organization of

affyPLM

is parent organization of

AffyExpress

is parent organization of

waveTiling

is parent organization of

gprege

is parent organization of

oneChannelGUI

is parent organization of

LMGene

is parent organization of

factDesign

is parent organization of

pickgene

is parent organization of

betr

is parent organization of

SCAN.UPC

is parent organization of

arrayQualityMetrics

is parent organization of

CALIB

is parent organization of

DEDS

is parent organization of

Harshlight

is parent organization of

MiChip

is parent organization of

OCplus

is parent organization of

bridge

is parent organization of

fRMA

is parent organization of

genArise

is parent organization of

lapmix

is parent organization of

maCorrPlot

is parent organization of

maSigPro

is parent organization of

MACAT

is parent organization of

maigesPack

is parent organization of

MDQC

is parent organization of

metaArray

is parent organization of

nnNorm

is parent organization of

plgem

is parent organization of

PVCA

is parent organization of

RAMA

is parent organization of

stepNorm

is parent organization of

virtualArray

is parent organization of

LPE

is parent organization of

vsn

is parent organization of

ACME

is parent organization of

CoGAPS

is parent organization of

flowFP

is parent organization of

rMAT

is parent organization of

SLqPCR

is parent organization of

nondetects

is parent organization of

unifiedWMWqPCR

is parent organization of

sSeq

is parent organization of

CNVrd2

is parent organization of

plateCore

is parent organization of

RSVSim

is parent organization of

TCC

is parent organization of

CQN

is parent organization of

COMPASS

is parent organization of

flowClust

is parent organization of

SPADE

is parent organization of

OrderedList

is parent organization of

SamSPECTRAL

is parent organization of

flowUtils

is parent organization of

RchyOptimyx

is parent organization of

TEQC

is parent organization of

flowType

is parent organization of

ADaCGH2

is parent organization of

flowViz

is parent organization of

flowTrans

is parent organization of

flowQB

is parent organization of

shinyTANDEM

is parent organization of

flowPlots

is parent organization of

flowPhyto

is parent organization of

flowCore

is parent organization of

flowMerge

is parent organization of

flowMap

is parent organization of

flowMeans

is parent organization of

spliceR

is parent organization of

flowMatch

is parent organization of

flowFit

is parent organization of

flowCyBar

is parent organization of

BEAT

is parent organization of

flowBeads

is parent organization of

CAMERA - Collection of annotation related methods for mass spectrometry data

is parent organization of

MBASED

is parent organization of

MethylAid

is parent organization of

sapFinder

is parent organization of

Pathview

is parent organization of

DSS

is parent organization of

RMassBank

is parent organization of

iontree

is parent organization of

Basic4Cseq

is parent organization of

BiGGR

is parent organization of

mzR

is parent organization of

PAPi

is parent organization of

CGHnormaliter

is parent organization of

Chimera

is parent organization of

BRAIN

is parent organization of

tweeDEseq

is parent organization of

SurvComp

is parent organization of

Triplex

is parent organization of

OmicCircos

is parent organization of

ggbio

is parent organization of

HTqPCR

is parent organization of

NormqPCR

is parent organization of

ddCt

is parent organization of

EasyqpcR

is parent organization of

SWAN

is parent organization of

PING

is parent organization of

DMRforPairs

is parent organization of

SeqGSEA

is parent organization of

h5vc

is parent organization of

deepSNV

is parent organization of

RUVSeq

is parent organization of

BHC

is parent organization of

epigenomix

is parent organization of

IRanges

is parent organization of

GeneNetworkBuilder

is parent organization of

MethylSeekR

is parent organization of

SRAdb

is parent organization of

casper

is parent organization of

htSeqTools

is parent organization of

ChIPXpress

is parent organization of

methVisual

is parent organization of

DeconRNASeq

is parent organization of

EDASeq

is parent organization of

RIPSeeker

is parent organization of

ShortRead

is parent organization of

seqbias

is parent organization of

DEGseq

is parent organization of

arrayMagic

is parent organization of

easyRNASeq

is parent organization of

DNAcopy

is parent organization of

CRLMM

is parent organization of

motifRG

is parent organization of

MMDiff

is parent organization of

MiRaGE

is parent organization of

LVSmiRNA

is parent organization of

ExiMiR

is parent organization of

RPA

is parent organization of

CexoR

is parent organization of

lumi

is parent organization of

baySeq

is parent organization of

tRanslatome

is parent organization of

DNaseR

is parent organization of

DEXSeq

is parent organization of

ChIPpeakAnno

is parent organization of

inSilicoMerging

is parent organization of

minfi

is parent organization of

Methylumi

is parent organization of

miRNApath

is parent organization of

sva package

is parent organization of

dmrFinder

is parent organization of

rqubic

is parent organization of

BicARE

is parent organization of

iBBiG

is parent organization of

eisa

is parent organization of

ChAMP

is parent organization of

cghMCR

is parent organization of

Bioconductor mailing list

is parent organization of

DiffBind

is parent organization of

NarrowPeaks

is parent organization of

CSAR

is parent organization of

CSSP

is parent organization of

TargetScore

is parent organization of

snapCGH

is parent organization of

iChip

is parent organization of

TurboNorm

is parent organization of

Ringo

is parent organization of

RLMM

is parent organization of

charm

is parent organization of

BiSeq

is parent organization of

MEDME

is parent organization of

MEDIPS

is parent organization of

BayesPeak

is parent organization of

ChIPseqR

is parent organization of

Rolexa

is parent organization of

cn.mops

is parent organization of

RankProd

is parent organization of

phyloseq

is parent organization of

HiTC

is parent organization of

CancerMutationAnalysis

is parent organization of

aCGH

is parent organization of

Repitools

is parent organization of

flowPeaks

is parent organization of

Mfuzz

is parent organization of

les

is parent organization of

OLIN

is parent organization of

affylmGUI

is parent organization of

CYCLE

is parent organization of

r3Cseq

is parent organization of

Piano

is parent organization of

RamiGO

hosts

DESeq

hosts

rGADEM

hosts

PICS

hosts

Jmosaics

hosts

R453Plus1Toolbox

hosts

BAC

hosts

targetscan.Hs.eg.db

hosts

Starr

hosts

Qvalue

hosts

topGO

hosts

MmPalateMiRNA

hosts

CGHcall

hosts

EGSEA

hosts

NOISeq
Usage and Citation Metrics

We found {{ ctrl2.mentions.all_count }} mentions in open access literature.

We have not found any literature mentions for this resource.

We are searching literature mentions for this resource.

Most recent articles:

{{ mention._source.dc.creators[0].familyName }} {{ mention._source.dc.creators[0].initials }}, et al. ({{ mention._source.dc.publicationYear }}) {{ mention._source.dc.title }} {{ mention._source.dc.publishers[0].name }}, {{ mention._source.dc.publishers[0].volume }}({{ mention._source.dc.publishers[0].issue }}), {{ mention._source.dc.publishers[0].pagination }}. (PMID:{{ mention._id.replace('PMID:', '') }})

Checkfor resource mentions.

Collaborator Network

A list of researchers who have used the resource and an author search tool

Find mentions based on location


{{ ctrl2.mentions.errors.location }}

A list of researchers who have used the resource and an author search tool. This is available for resources that have literature mentions.

Ratings and Alerts
Report Information

No rating or validation information has been found for Bioconductor.

No alerts have been found for Bioconductor.

Data and Source Information

Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400

About

The SciCrunch Infrastructure was developed as a cooperative data platform to be used by diverse communities in making data more FAIR.

Recent News Entries

New Release: NeuroMorpho.Org Version 8.6 (12/4/23), with 14,452 new tracings from 45 datasets

Dr. Martone on BrainFacts.org a FAIR video

With 2023 there are new NIH guidelines on data deposition, are you ready?

Contact Us

FAIR Data Informatics Lab

University of California, San Diego
9500 Gilman Drive, Mail Code 0608
La Jolla, CA 92093-0608
United States

info  scicrunch.org

About SciCrunch | Privacy Policy | Terms of Service

SciCrunch