URL: https://broadinstitute.github.io/warp/docs/Pipelines/scANVI_Pipeline/README
Proper Citation: scANVI pipeline (RRID:SCR_028705)
Description: Software cloud-optimized WDL workflow that performs cell type label transfer using scVI and scANVI (single-cell ANnotation using Variational Inference) deep generative models. It integrates single-cell RNA-seq (GEX) and, optionally, ATAC-seq data with an annotated reference dataset to transfer cell type labels via semi-supervised learning.
Synonyms: , single-cell ANnotation using Variational Inference
Resource Type: data analysis software, data processing software, software application, software resource
Keywords: Single-Cell ANnotation, variational inference, single cell data, 10x technology data, cell bar code correction pipeline, reads alignment, unique molecular identifier correction, mouse data sets analysis, human data sets analysis,
Availability: Free, Freely available
Resource Name: scANVI pipeline
Resource ID: SCR_028705
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Source: SciCrunch Registry (RRID:SCR_005400)
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