URL: https://github.com/cyaguesa/SL-quant/
Proper Citation: SL-quant (RRID:SCR_016205)
Description: Source code for a bash pipeline that quantifies splice-leader (SL) trans-splicing events by genes in the nematode C. elegans. It is designed to work downstream of read mapping and takes the reads left unmapped as primary input.
Abbreviations: SLQ
Resource Type: data analysis software, data processing software, sequence analysis software, software application, software resource
Keywords: RNA-seq, trans-splicing, pipeline, c elegans, bash, nematode, read, mapping, gene
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