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URL: http://nashua.case.edu/PathwaysWeb/Web/
Proper Citation: PathCase Pathways Database System (RRID:SCR_001835)
Description: An integrated software system for storing, managing, analyzing, and querying biological pathways at different levels of genetic, molecular, biochemical and organismal detail. The system contains a pathways database and associated tools to store, compare, query, and visualize metabolic pathways. The aim is to develop an integrated database and the associated tools to support computational analysis and visualization of biochemical pathways. At the computational level, PathCase allows users to visualize pathways in multiple abstraction levels, and to pose predetermined and ad hoc queries using a graphical user interface. Pathways are represented as graphs, and implemented as a relational database. The available functional annotations include the identity of the substrate(s), product(s), cofactors, activators, inhibitors, enzymes or other processing molecules, GO-categories of enzymes (as well as GO hierarchy visualizations two-way-linked to PathCase enzymes), EC number information and the associated links, and synonyms and encoding genes of gene products.
Synonyms: PathCase - Metabolic Pathway Database System, PathCase
Resource Type: software resource, data or information resource, software application, analysis service resource, data storage software, service resource, production service resource, database, data analysis software, data visualization software, data processing software, data analysis service
Defining Citation: PMID:18728044
Keywords: pathway analysis software, pathway analysis, pathway, metabolic, systems function, behavior, visualize pathway, web interface, integrated
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