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URL: http://www.sanger.ac.uk/resources/software/vagrent/
Proper Citation: VAGrENT (RRID:SCR_005180)
Description: Software tool set for calculating the biological consequences of genomic variations. The suite of perl modules compares genomic variations with reference genome annotations and generates the possible effects each variant may have on the transcripts it overlaps. It evaluates each variation/transcript combination and describes the effects in the mRNA, CDS and protein sequence contexts. It provides details of the sequence and position of the change within the transcript / protein as well as Sequence Ontology terms to classify its consequences.
Abbreviations: VAGrENT
Synonyms: VAGrENT: Variation Annotation Generator, Variation Annotation Generator
Resource Type: software toolkit, software resource
Keywords: perl, genomic variation, transcript, mrna, cds, protein sequence, protein, sequence
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