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URL: http://mrfast.sourceforge.net/
Proper Citation: mrFAST (RRID:SCR_005487)
Description: Software designed to map short reads generated with the Illumina platform to reference genome assemblies; in a fast and memory-efficient mannerl. Currently Supported Features: * Output in SAM format * Indels up to 8 bp (4 bp deletions and 4 bp insertions) * Paired-end mapping ** Discordant option to generate mapping file ready for VariationHunter to detect structural variants. * One end anchored (OEA) map locations for novel sequence insertion detection with NovelSeq * Matepair library mapping (long inserts with RF orientation). Planned Features: * Multithreading
Abbreviations: mrFAST
Synonyms: mrFAST - Micro Read Fast Alignment Search Tool, Micro Read Fast Alignment Search Tool
Resource Type: software resource
Defining Citation: PMID:19718026
Keywords: next-generation sequencing, bio.tools
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Source: SciCrunch Registry
