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URL: http://indel.bioinfo.sdu.edu.cn/gridsphere/gridsphere
Proper Citation: IndelFR - Indel Flanking Region Database (RRID:SCR_006050)
Description: THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016. Indel Flanking Region Database is an online resource for indels and the flanking regions of proteins in SCOP superfamilies, including amino acid sequences, lengths, locations, secondary structure constitutions, hydrophilicity / hydrophobicity, domain information, 3D structures and so on. It aims at providing a comprehensive dataset for analyzing the qualities of amino acid insertion/deletions(indels), substitutions and the relationship between them. The indels were obtained through the pairwise alignment of homologous structures in SCOP superfamilies. The IndelFR database contains 2,925,017 indels with flanking regions extracted from 373,402 structural alignment pairs of 12,573 non-redundant domains from 1053 superfamilies. IndelFR has already been used for molecular evolution studies and may help to promote future functional studies of indels and their flanking regions.
Abbreviations: IndelFR
Synonyms: IndelFR: Indel Flanking Region Database, Indel Flanking Region Database
Resource Type: data or information resource, database
Defining Citation: PMID:22127860
Keywords: indel, flanking region, protein, structural domain, domain, protein superfamily, protein structure, insertion/deletion, insertion, deletion, protein sequence, sequence, structure, protein domain, bio.tools
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Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) |
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