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URL: http://seqbarracuda.sourceforge.net/
Proper Citation: BarraCUDA (RRID:SCR_006881)
Description: A sequence mapping software that utilizes the massive parallelism of graphics processing units to accelerate the inexact alignment of short sequence reads to a particular location on a reference genome. It can align a paired-end library containing 14 million pairs of 76bp reads to the Human genome in about 27 minutes (from fastq files to SAM alignment) using a ��380 NVIDIA Geforce GTX 680*. The alignment throughput can be boosted further by using multiple GPUs (up to 8) at the same time. Being based on BWA (http://bio-bwa.sf.net) from the Sanger Institute, BarraCUDA delivers a high level of alignment fidelity and is comparable to other mainstream alignment programs. It can perform gapped alignment with gap extensions, in order to minimise the number of false variant calls in re-sequencing studies.
Abbreviations: BarraCUDA
Resource Type: software resource
Defining Citation: PMID:22244497, PMID:19451168
Keywords: gpu/cuda, bio.tools
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