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URL: https://idseq.net/
Proper Citation: IDseq (RRID:SCR_019038)
Description: Open source cloud based pipeline and analysis service for metagenomic pathogen detection and monitoring. Hypothesis free global software platform that helps scientists identify pathogens in metagenomic sequencing data. IDseq Portal accepts raw mNGS data, performs host and quality filtration steps, then executes assembly based alignment pipeline which results in assignment of reads and contigs to taxonomic categories.
Synonyms: Infectious Disease Sequencing Platform, IDseq Portal
Resource Type: topical portal, production service resource, organism-related portal, portal, data or information resource, service resource, analysis service resource
Defining Citation: DOI:10.1101/2020.04.07.030551
Keywords: Metagenomic pathogen detection, metagenomic pathogen monitoring, identify pathogens, metagenomic sequencing data, data analysis
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