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URL: https://github.com/caleblareau/mgatk
Proper Citation: mgatk (RRID:SCR_021159)
Description: Software python-based command line interface for processing .bam files with mitochondrial reads and generating high-quality heteroplasmy estimation from sequencing data. This package places a special emphasis on mitochondrial genotypes generated from single-cell genomics data, primarily mtscATAC-seq, but is generally applicable across other assays.
Synonyms: mitochondrial genome analysis toolkit
Resource Type: software application, software resource, software toolkit, data processing software
Defining Citation: DOI:10.1038/s41587-020-0645-6
Keywords: processing .bam files, mitochondrial reads, heteroplasmy estimation, sequencing data, mitochondrial genotypes, mtscATAC-seq
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