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URL: https://github.com/saeyslab/nichenetr
Proper Citation: NicheNet (RRID:SCR_023158)
Description: Software tool as R implementation of NicheNet method to predict active ligand-target links between interacting cells. NicheNet uses human or mouse gene expression data of interacting cells as input and combines this with prior model that integrates existing knowledge on ligand-to-target signaling paths. This allows to predict ligand-receptor interactions that might drive gene expression changes in cells of interest.
Resource Type: software application, simulation software, software resource
Defining Citation: PMID:31819264
Keywords: predict ligand-receptor interactions, intercellular communication, predict active ligand target interactions, interacting cells prediction,
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