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URL: https://github.com/sanket-desai/InfectiousPathogenDetector2
Proper Citation: InfectiousPathogenDetector2 (RRID:SCR_026220)
Description: IPD2 is updated version of InfectiousPathogenDetector, in-silico GUI-based automated pathogen analysis pipeline for seamless analysis of data from heterogenous NGS platforms. IPD performs integrated variants analysis, along with systematic quantification of pathogen genomes. IPD additionally has an in-built SARS-CoV-2 analysis module, for assignment of viral clades of the samples analyzed and an automated report generation.
Abbreviations: IPD2, IPD 2.0
Synonyms: Infectious Pathogen Detector (IPD) 2.0
Resource Type: data processing software, software application, data analysis software, source code, software resource
Defining Citation: PMID:33985433
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