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Feature Representation Enhancement End-to-end Protein Interaction Inference (RRID:SCR_026316)Copy Citation Copied
URL: https://github.com/qqpigass/FREEPII
Proper Citation: Feature Representation Enhancement End-to-end Protein Interaction Inference (RRID:SCR_026316)
Description: Software application encompassing autonomous feature extraction and feature representation enhancement for PPIs and protein complexes inference. FREEPII establishes feature maps that are consistent with model training, and emphasizes learning the feature representation of proteins rather than the feature representation of PPI, reducing the computational complexity from N^2 to N (N: number of proteins). FREEPII uses protein sequences to expand the information available for calculating data similarity between proteins. Furthermore, it introduces network-level information into the final feature representation to rescale the strength of interactions present in CF-MS data.
Abbreviations: FREEPII
Resource Type: software resource, source code
Keywords: co-fractionation coupled with mass spectrometry analysis, protein-protein interactions, protein interactome inference,
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