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URL: http://sourceforge.net/projects/rnaseqvariantbl/
Proper Citation: BlackOPs (RRID:SCR_000032)
Description: Open source software tool that simulates experimental RNA-seq and DNA whole exome sequences derived from reference genome, aligns these sequences by custom parameters, detects variants and outputs blacklist of positions and alleles caused by mismapping. Used to characterize mappability of RNA-Seq reads and create blacklist of genomic positions of mismapped reads. This blacklist is used to filter potential false positives from variant or RNA editing calls.
Synonyms: BlackOPs: RNA-Seq Variant Blacklist Tool
Resource Type: software resource, software application, sequence analysis software, data analysis software, data processing software
Defining Citation: PMID:23935067
Keywords: rna seq, false positive, genome editing, rna editing, mismapped reads
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