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URL: http://www.cs.utah.edu/~miriah/pathline/Overview.html
Proper Citation: Pathline (RRID:SCR_000635)
Description: Software visualization tool for comparative functional genomics that supports analysis of three types of biological data at once: functional data such as gene activity measurements; pathway data that presents a series of reactions within a cellular process; and phylogenetic data describing ancestral relationships between species. The design of Pathline includes two new visual encoding techniques. The first is an encoding of a linearized metabolic pathway representation that provides appropriate topological information and supports the comparison of quantitative data along the pathway. The second is a curvemap, a matrix layout of temporal expression data for enhanced perception of trends in gene and cell activity levels across multiple species.
Abbreviations: Pathline
Synonyms: Pathline: A Tool For Comparative Genomics
Resource Type: software resource, software application, data analysis software, data processing software, data visualization software
Keywords: comparative functional genomics, functional data analysis, gene activity measurements, pathway data analysis, phylogenetic data analysis, ancestral relationships between species,
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