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URL: http://sourceforge.net/projects/gmcloser/
Proper Citation: GMcloser (RRID:SCR_000646)
Description: Software that fills and closes the gaps present in scaffold assemblies, especially those generated by the de novo assembly of whole genomes with next-generation sequencing (NGS) reads. Unlike other gap-closing tools that use only NGS reads, GMcloser uses preassembled contig sets or long read sets as the sequences to close gaps and uses paired-end (PE) reads and a likelihood-based algorithm to improve the accuracy and efficiency of gap closure. The efficiency of gap closure can be increased by successive treatments with different contig sets.
Abbreviations: GMcloser
Synonyms: Gmcloser - Closing the gaps in scaffolds with preassembled contigs
Resource Type: software resource
Defining Citation: PMID:26261222
Keywords: scaffolding, bio.tools
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