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URL: http://www.bioconductor.org/packages/release/bioc/html/exomePeak.html
Proper Citation: ExomePeak (RRID:SCR_001076)
Description: Software package developed for the analysis of affinity-based epitranscriptome shortgun sequencing data from MeRIP-seq (maA-seq). It was built on the basis of the exomePeak MATLAB package with new functions for differential analysis of two experimental conditions to unveil the dynamics in post-transcriptional regulation of the RNA methylome. The exomePeak R-package accepts and statistically supports multiple biological replicates, internally removes PCR artifacts and multi-mapping reads, outputs exome-based binding sites (RNA methylation sites) and detects differential post-transcriptional RNA modification sites between two experimental conditions in term of percentage rather the absolute amount.
Abbreviations: exomePeak
Resource Type: software resource
Defining Citation: PMID:23589649
Keywords: r, matlab
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