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URL: http://datahub.io/dataset/kupkb
Proper Citation: Kidney and Urinary Pathway Knowledge Base (RRID:SCR_001746)
Description: A collection of omics datasets (mRNA, proteins and miRNA) that have been extracted from PubMed and other related renal databases, all related to kidney physiology and pathology giving KUP biologists the means to ask queries across many resources in order to aggregate knowledge that is necessary for answering biological questions. Some microarray raw datasets have also been downloaded from the Gene Expression Omnibus and analyzed by the open-source software GeneArmada. The Semantic Web technologies, together with the background knowledge from the domain's ontologies, allows both rapid conversion and integration of this knowledge base. SPARQL endpoint http://sparql.kupkb.org/sparql The KUPKB Network Explorer will help you visualize the relationships among molecules stored in the KUPKB. A simple spreadsheet template is available for users to submit data to the KUPKB. It aims to capture a minimal amount of information about the experiment and the observations made.
Abbreviations: KUPKB
Synonyms: Kidney & Urinary Pathway Knowledge Base
Resource Type: analysis service resource, data analysis service, storage service resource, production service resource, data repository, service resource, data set, data or information resource
Defining Citation: PMID:21624162
Keywords: kidney, urinary, urine, pathway, molecule, visualizer, gene, protein, mirna, metabolite, mrna, microarray, ortholog, rdf, renal cell, anatomy, animal model, disease, sparql, proteomics, ontology, biomarker, gene expression, physiology, pathology
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National Institute of Health and Medical Research; Rennes; France |
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