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URL: http://www.agcol.arizona.edu/software/tcw/
Proper Citation: TCW (RRID:SCR_001875)
Description: Software package for assembling, annotating, querying, and comparing transcript and expression level data that consists of two parts: * singleTCW (sTCW): Single transcript sets or assemblies; annotation; differential expression (EdgeR, DEGSeq, DESeq, GoSeq) * multiTCW (mTCW): Comparison of multiple transcript sets; ortholog grouping (e.g., OrthoMCL) It has been tested on Linux and uses Java, mySQL and optionally R.
Abbreviations: TCW
Synonyms: Transcriptome Computational Workbench, TCW: Transcriptome Computational Workbench
Resource Type: software resource
Defining Citation: PMID:23874959
Keywords: transcript, assembly annotation, differential expression, transcript set, ortholog, expression, linux, java, mysql, r, bio.tools
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