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URL: https://code.google.com/p/tbrowse/
Proper Citation: tbrowse (RRID:SCR_001918)
Description: Software providing a HTML5/javascript based browser for visualizing RNA-seq results in the familiar track layout of common genome browser. But given the quantitative nature of RNA-seq data, in addition to visualizing sequence coverage, the browser quantitates transcript abundance across regions of interest. The HTML5 functionality is made of use to render all the tracks using the canvas drawing element. This greatly reduces the load on servers and allows for rich interactive graphics without the need for third-party plugins. Furthermore, this framework completely segregates data from visualization, making development much easier. The browser is designed to run on all modern browsers: Firefox, Safari, Chrome, Opera and Internet Explorer (though not recommended).
Abbreviations: tbrowse
Synonyms: tbrowse - HTML5 Transcriptome Browser
Resource Type: software resource
Keywords: genome, browser, transcriptome, html5, canvas, extjs, visualization, rna-seq
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