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URL: http://www.pathwaycommons.org/pc
Proper Citation: Pathway Commons (RRID:SCR_002103)
Description: Database of publicly available pathways from multiple organisms and multiple sources represented in a common language. Pathways include biochemical reactions, complex assembly, transport and catalysis events, and physical interactions involving proteins, DNA, RNA, small molecules and complexes. Pathways were downloaded directly from source databases. Each source pathway database has been created differently, some by manual extraction of pathway information from the literature and some by computational prediction. Pathway Commons provides a filtering mechanism to allow the user to view only chosen subsets of information, such as only the manually curated subset. The quality of Pathway Commons pathways is dependent on the quality of the pathways from source databases. Pathway Commons aims to collect and integrate all public pathway data available in standard formats. It currently contains data from nine databases with over 1,668 pathways, 442,182 interactions,414 organisms and will be continually expanded and updated. (April 2013)
Abbreviations: PC
Resource Type: software resource, data or information resource, data access protocol, web service, database
Defining Citation: PMID:21071392
Keywords: biological pathway, pathway, molecule, biopax, standard exchange format, bio.tools
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