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URL: http://insulatordb.uthsc.edu/
Proper Citation: CTCFBSDB (RRID:SCR_002279)
Description:
A comprehensive collection of experimentally determined and computationally predicted CCCTC-binding factor (CTCF) binding sites (CTCFBS) from the literature. The database is designed to facilitate the studies on insulators and their roles in demarcating functional genomic domains. The CTCFBS Prediction Tool allows users to scan sequences for the single best match to CTCF position weight matrices. Currently (March 2014), the database contains almost 15 million experimentally determined CTCF binding sites across several species. CTCF binding sites were collected from published papers containing CTCF binding sites identified using ChIPSeq or similar methods, data from the ENCODE project, and a set of approximately 100 manually curated binding sites identified by low-throughput experiments. Users can browse insulator sequence features, function annotations, genomic contexts including histone methylation profiles, flanking gene expression patterns and orthologous regions in other mammalian genomes. Users can also retrieve data by text search, sequence search and genomic range search.
Abbreviations: CTCFBSDB, CTCFBSDB 2.0
Synonyms: CTCFBSDB: a CTCF binding site database for characterization of vertebrate genomic insulators, CTCFBSDB 2.0: A database for CTCF binding sites and genome organization
Resource Type: data or information resource, analysis service resource, service resource, production service resource, database, data analysis service
Defining Citation: PMID:23193294, PMID:17981843
Keywords: cctc-binding factor, ctcf, ctcf binding site, insulator, genomic insulator, genome, binding site, FASEB list
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University of Tennessee Health Science Center; Tennessee; USA |
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