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URL: http://ccb.jhu.edu/software/glimmerhmm/
Proper Citation: GlimmerHMM (RRID:SCR_002654)
Description: A gene finder based on a Generalized Hidden Markov Model (GHMM). Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models for the coding and noncoding models . Currently, GlimmerHMM's GHMM structure includes introns of each phase, intergenic regions, and four types of exons (initial, internal, final, and single).
Abbreviations: GlimmerHMM
Synonyms: GlimmerHMM - Eukaryotic Gene-Finding System
Resource Type: source code, software resource
Defining Citation: PMID:15145805
Keywords: gene, hidden markov model
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