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URL: http://compgen.bscb.cornell.edu/phast/
Proper Citation: PHAST (RRID:SCR_003204)
Description: A freely available software package for comparative and evolutionary genomics that consists of about half a dozen major programs, plus more than a dozen utilities for manipulating sequence alignments, phylogenetic trees, and genomic annotations. For the most part, PHAST focuses on two kinds of applications: the identification of novel functional elements, including protein-coding exons and evolutionarily conserved sequences; and statistical phylogenetic modeling, including estimation of model parameters, detection of signatures of selection, and reconstruction of ancestral sequences. It consists of over 60,000 lines of C code.
Abbreviations: PHAST
Synonyms: Phylogenetic Analysis with Space/Time Models
Resource Type: software resource
Defining Citation: PMID:21278375, DOI:10.1093/bib/bbq072
Keywords: evolutionary genomic, evolution, genomics, sequence alignment, phylogenetic tree, genomic annotation, functional element, protein-coding exon, conserved sequence, phylogenetic modeling, ancestral sequence, c
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