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Proper Citation: Network Data Exchange (NDEx) (RRID:SCR_003943)
Description: Repository where scientists and organizations can share, store, manipulate, and publish biological network data. Users can also run their own copies of NDEx Server software in cases where stored networks must be kept in highly secure environment (such as for HIPAA compliance) or where high application load is incompatible with shared public resource. Open source software system that is part of Cytoscape family. Project of Cytoscape Consortium in conjunction with Ideker lab at UCSD School of Medicine. Public forum where biologists can exchange and publish computable network models in many types and formats. NDEx is based on REST web API which can be accessed by any application, including NDEx website and NDEx Cytoscape App. NDEx networks are assigned stable, globally unique URIs and so can be referenced by publications, by other networks, and by analytic applications.
Abbreviations: NDEx
Synonyms: ndex bio, NDEx, Network Data Exchange, UCSD NDEx, ndex biology, the Network Data Exchange
Resource Type: database, data or information resource
Defining Citation: PMID:34570431, PMID:28150243
Keywords: network, pathway, network model, web service, FASEB list
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Source: SciCrunch Registry
