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URL: http://bix.ucsd.edu/projects/singlecell/
Proper Citation: Velvet-SC (RRID:SCR_004377)
Description: Software package for short read data from single cells that improves assembly through use of progressively increasing coverage cutoff. Used for single cell Illumina sequences, allows variable coverage datasets to be utilized with assembly of E. coli and S. aureus single cell reads. Assembles single cell genome of uncultivated SAR324 clade of Deltaproteobacteria.
Abbreviations: Velvet SC
Synonyms: Velvet Single Cell
Resource Type: software resource, data analysis software, software application, sequence analysis software, data processing software
Defining Citation: PMID:21926975
Keywords: genome, single, cell, short, read, assembly
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