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URL: http://bioinfo.unl.edu/raiphy.php
Proper Citation: RAIphy (RRID:SCR_004720)
Description: A semi-supervised metagenomic fragment classification software program that utilizes the genome signatures to characterize the DNA sequences and taxonomic classification is based on an information theoretic measure referred as Relative Abundance Index (RAI). A DNA sequence of unknown source is classified and taxonomically labeled based on the phylogenetic profiles of the previously sequenced genomes. The profiles are iteratively updated using the unknown DNA sequences and the classification results. After a few cycles, the metagenome is classified into operational taxonomic units.
Abbreviations: RAIphy
Resource Type: software resource
Defining Citation: PMID:21281493
Keywords: classification, metagenome, phylogenetic profile, genome, taxonomic classification, dna sequence, relative abundance index
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