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URL: http://sourceforge.net/projects/viralfusionseq/
Proper Citation: VFS (RRID:SCR_005138)
Description: A versatile high-throughput sequencing (HTS) tool for discovering viral integration events and reconstruct fusion transcripts at single-base resolution. It combines soft-clipping information, read-pair analysis, and targeted de novo assembly to discover and annotate viral-human fusion events. A simple yet effective empirical statistical model is used to evaluate the quality of fusion breakpoints. Minimal user defined parameters are required.
Abbreviations: VFS
Synonyms: ViralFusionSeq, ViralFusionSeq (VFS)
Resource Type: software resource
Defining Citation: PMID:23314323
Keywords: ubuntu, debian, high-throughput sequencing, virus, reconstruct, fusion transcript, transcript, integration, fusion, bio.tools
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