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URL: http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl
Proper Citation: hmChIP (RRID:SCR_005407)
Description: A database of genome-wide chromatin immunoprecipitation (ChIP) data in human and mouse. Currently, the database contains >2000 samples from >500 ChIP-seq and ChIP-chip experiments, representing a total of >170 proteins and >10,000,000 protein-DNA interactions (March 2014). A web server provides an interface for database query. Protein-DNA binding intensities can be retrieved from individual samples for user-provided genomic regions. The retrieved intensities can be used to cluster samples and genomic regions to facilitate exploration of combinatorial patterns, cell type dependencies, and cross-sample variability of protein-DNA interactions.
Abbreviations: hmChIP
Resource Type: data or information resource, analysis service resource, service resource, production service resource, database, data analysis service
Defining Citation: PMID:21450710
Keywords: chromatin immunoprecipitation, chip-seq, chip-chip, protein, protein-dna interaction, binding intensity
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Johns Hopkins Bloomberg School of Public Health; Maryland; USA |
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