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URL: http://sourceforge.net/p/treq/home/Home/
Proper Citation: TreQ (RRID:SCR_005505)
Description: A software read mapper for high-throughput DNA sequencing reads, in particular one to several hundred nucleotides in length, and for large edit distance between sequencing read and match in the reference genome. It can cope particularly well with indels for single-best hit recall of 200nt reads simulated from the human reference genome. TreQ performs best at a running time comparable to BWA at large edit distance settings.
Abbreviations: TreQ
Synonyms: TreQ: Indel-tolerant Read Mapper
Resource Type: software resource
Defining Citation: PMID:22962448
Keywords: bio.tools
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