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URL: http://mbgd.genome.ad.jp/CGAT/
Proper Citation: CGAT (RRID:SCR_005550)
Description: A comparative genome analysis tool for detailed comparison of closely related bacterial-sized genomes. It visualizes precomputed pairwise genome alignments on both dotplot and alignment viewers. Users can add information on this alignment, such as existence of tandem repeats or interspersed repetitive sequences and changes in codon usage bias, to facilitate interpretation of the observed genomic changes. Besides visualization functionalities, it also provides a general framework to process genome-scale alignments using various existing alignment programs. CGAT employs a client-server architecture, which consists of AlignmentViewer (client; a Java application) and DataServer (a set of Perl scripts). The DataServer package contains data construction scripts and CGI scripts and the AlignmentViewer program visualizes the alignment data obtained from the server thorough the HTTP protocol.
Abbreviations: CGAT
Synonyms: CGAT - A Comparative Genome Analysis Tool, Comparative Genome Analysis Tool
Resource Type: software resource
Defining Citation: PMID:17062155
Keywords: genome, alignment, visualizing, evolution, dotplot
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