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URL: http://phytophthora.vbi.vt.edu
Proper Citation: Oomycetes Soybean EST Database (RRID:SCR_005883)
Description: THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 15, 2013. An integrated resource hosting combined EST data from Oomycetes. It also separates Soybean ESTs from compatible P.sojae infection libraries. Public soybean unigenes and publicly available soybean infection libraries are also part of this database. Currently in this database we have placed 10 libraries from P.sojae(sHA,sHB,sMA,sML,sMY,sMC,sZG,sZO,sZS,iMY) having 33350 raw sequences. Additionally, there are 99,320 EST sequences from P.infestans from NCBI. For P.infestans sequences cleaning information is not available. These sequences are clustered and assembled and data analysis was performed by us. We have separated Soybean ESTs from P.sojae libraries using insillico methods. The soybean libraries are named as gHA and gHB based on their origin from sHA or sHB. All publicly available soybean unigenes(37,465) are added to this database. For public soybean sequences we did not perform any cleaning or assembly. The unigenes were annotated prior to storing. Recently, we added 37492 ESTs from Hyaloperonospora parasitica. All the ESTs are clustered into unigenes and annotated using blastx to nr database, interproscan, TMHMM and SignalP. Annotations are updated every 3 months.
Abbreviations: OSESTDB
Synonyms: Oomycetes Soybean EST DB, Oomycetes and Soybean EST Database, Oomycetes Soybean Database
Resource Type: data or information resource, database
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