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Proper Citation: XuvTools (RRID:SCR_005894)
Description: XuvTools (pronounced ex-you-vee-tools) is a fully automated 3D stitching software for biomedical image data, typically confocal microscopy images. XuvTools runs on Microsoft Windows XP and Vista, Linux and Apple Mac computers. It supports 32 and 64bit operating systems (with 64bit highly preferred). The goal of XuvTools is to provide tools, that combine multiple microscopic recordings to obtain a larger field of view (stitching) and a higher dynamic range (HDR recombination), or better resolution (multi view reconstruction), and to make these tools publicly available. What XuvTools can do: * Full 3D Stitching * Scaling, if the voxel sizes are known from image data * Fully automatic stitching modes * Manual pre-alignment modes * Arbitrary large datasets * Reads stage coordinates if available * free, no hidden costs * Reads many many input formats via LOCI Bio-Formats and Dmitry Fedorov''s BioImage. Limitations of XuvTools: (current limitations, we are working on it!) * No 2D Stitching: stacks need 4 Z-slices or more * No memory management: You need lots of RAM * No rotational alignment * The only supported output formats are: Imaris, HDF5 (No TIFF output support)
Abbreviations: XuvTools
Synonyms: www.XuvTools.org, XuvTools - the eXtend yoUr View Toolkit
Resource Type: data processing software, software resource, image processing software, software application
Defining Citation: PMID:19196411
Keywords: 3d microscopy, image stitching, bleaching, correlation, large scale microscopy, mosaic, virtual microscopy, 3d, confocal microscopy, microscopy
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