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URL: http://www.centropiaggio.unipi.it/software
Proper Citation: NEuronMOrphological analysis tool (RRID:SCR_006304)
Description: Software to handle and process large numbers of optical microscopy image files of neurons in culture or slices in order to automatically run batch routines, store data and apply multivariate classification and feature extraction using 3-way principal component analysis (PCA). This freeware for semi automated quantitative and dynamic analysis of neuron morphometry incorporates the most important microstructural quantification methods, such as fractal and sholl analysis with statistical and classification tools to provide an integrated image processing environment which enables fast and easy feature identification. It includes: * Friendly interactive graphical user interface * Image pre-processing * Morphological analysis * Topological analysis * Cell counting * 3-way PCA analysis (also available as an ImageJ plugin) * Plot of variables Sequential images of labeled or unlabelled neurons or tissue slices can be uploaded batch-wise in order to create a 3 axis (time, image coordinate) data base and a datamatrix of variables for 3-way Principal Component Analysis*.
Abbreviations: NEMO
Synonyms: NEuronMOrphological analysis tool NEMO, NEMO (NEuron MOrphological analysis tool)
Resource Type: software resource, image analysis software, software application, image processing software, data processing software
Keywords: morphometric analysis, neuron, morphology, principal component analysis, image pre-processing, neuron reconstruction, morphological analysis, neuron counting, neuron morphology, image processing, morphometrics, 3-way principal component analysis, topological analysis
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