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URL: http://www.bioconductor.org/packages/devel/bioc/html/ChIPXpress.html
Proper Citation: ChIPXpress (RRID:SCR_006653)
Description: A R package designed to improve ChIP-seq and ChIP-chip target gene ranking using publicly available gene expression data. It takes as input predicted transcription factor (TF) bound genes from ChIPx data and uses a corresponding database of gene expression profiles downloaded from NCBI GEO to rank the TF bound targets in order of which gene is most likely to be functional TF target.
Abbreviations: ChIPXpress
Synonyms: ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles
Resource Type: software resource
Keywords: gene expression, chip-seq, chip-chip, transcription factor, target gene, gene, gene expression profile
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