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URL: http://rulai.cshl.edu/splicetrap/
Proper Citation: SpliceTrap (RRID:SCR_006728)
Description: A statistic tool for quantifying exon inclusion ratios in paired-end RNA-seq data, with broad applications for the study of alternative splicing. SpliceTrap approaches to exon inclusion level estimation as a Bayesian inference problem. For every exon it quantifies the extent to which it is included, skipped or subjected to size variations due to alternative 3?/5? splice sites or Intron Retention. In addition, SpliceTrap can quantify alternative splicing within a single cellular condition, with no need of a background set of reads.
Abbreviations: SpliceTrap
Resource Type: software resource
Defining Citation: PMID:21896509
Keywords: bio.tools
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