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URL: http://gbrowse.org/
Proper Citation: GBrowse (RRID:SCR_006829)
Description: A database and interactive web site for manipulating and displaying annotations on genomes. Features include: detailed views of the genome; use of a variety of premade or personally made glyphs ; customizable order and appearance of tracks by administrators and end-users; search by annotation ID, name, or comment; support of third party annotation using GFF formats; DNA and GFF dumps; connectivity to different databases, including BioSQL and Chado; and a customizable plug-in architecture (e.g. run BLAST, find oligonucleotides, design primers, etc.). GBrowse is distributed as source code for Macintosh OS X, UNIX and Linux platforms, and as pre-packaged binaries for Windows machines. It can be installed using the standard Perl module build procedure, or automated using a network-based install script. In order to use the net installer, you will need to have Perl 5.8.6 or higher and the Apache web server installed. The wiki portion accepts data submissions.
Abbreviations: GBrowse
Synonyms: Generic Genome Browser
Resource Type: database, data or information resource
Defining Citation: PMID:19957275, PMID:18428797, PMID:12368253, PMID:21400697, PMID:20194461, PMID:19357095, DOI:10.1002/0471250953.bi0909s28
Keywords: genome, annotation, database, perl, virus, dna, protein, reference sequence, chromosome, visualization, bio.tools
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Source: SciCrunch Registry
