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URL: http://sourceforge.net/projects/hiahia/
Proper Citation: HIA (RRID:SCR_006865)
Description: A sequence alignment tool to align both short and long reads to a reference genome. HIA has two indexes, a hash table index and a suffix array index. The hash table is capable of the direct lookup of a q-gram and the suffix array is very fast in the lookup of a variable length q-gram. Our experiments show that the hybrid of hash table and suffix array is useful at the perspective of speed to map NGS sequencing reads to a reference genome sequence.
Abbreviations: HIA
Synonyms: Hybrid Index based sequence Alignment, HIA - Hybrid Index based sequence Alignment
Resource Type: software resource
Keywords: matlab, java, command-line
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