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URL: http://fps.sdsc.edu/
Proper Citation: Family Pairwise Search - Protein Family Classification (RRID:SCR_007202)
Description: Family Pairwise Search (FPS) is a protein homology detection algorithm that combines sequence similarity scores from a pairwise alignment algorithm such as Smith-Waterman or BLAST. Source code and a web server are available. This is a method for scoring a query sequence against a family of sequences. (Note: the query sequence may alternatively be a sequence, a GCG profile or a BLAST checkpoint file.) FPS compares the query sequence individually (pairwise) to each sequence in the family and then combines the pairwise scores into an overall score for the match. This site provides access to * a web server to allow you to use FPS to search various protein family libraries for matches to a protein sequence, * an overview of the FPS algorithm, * a description of the inputs and outputs for the FPS server, * a sample output from the FPS server, and * a release notes for FPS, and * links to several papers about FPS, and * the FPS source code for non-comercial use. * COPYRIGHT information and how to license FPS for commercial use is described here.
Abbreviations: FPS
Synonyms: Family Pairwise Search
Resource Type: service resource, source code, software resource
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