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URL: http://research-pub.gene.com/gmap/
Proper Citation: GMAP (RRID:SCR_008992)
Description: THIS RESOURCE IS NO LONGER IN SERVICE, documented August 29, 2016. A software program for mapping and aligning cDNA sequences to a genome. The program maps and aligns a single sequence with minimal startup time and memory requirements, and provides fast batch processing of large sequence sets. The program generates accurate gene structures, even in the presence of substantial polymorphisms and sequence errors, without using probabilistic splice site models. Methodology underlying the program includes a minimal sampling strategy for genomic mapping, oligomer chaining for approximate alignment, sandwich DP for splice site detection, and microexon identification with statistical significance testing.
Abbreviations: GMAP
Resource Type: software resource, image analysis software, software application, alignment software, source code, data processing software
Defining Citation: PMID:15728110
Keywords: mrna, est sequence, expressed sequence tag, sequence, cdna sequence, genome, cdna, bio.tools
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