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URL: https://www.hsph.harvard.edu/skat/
Proper Citation: SKAT (RRID:SCR_009396)
Description: Software application that is a SNP-set (e.g., a gene or a region) level test for association between a set of rare (or common) variants and dichotomous or quantitative phenotypes. SKAT aggregates individual score test statistics of SNPs in a SNP set and efficiently computes SNP-set level p-values, e.g. a gene or a region level p-value, while adjusting for covariates, such as principal components to account for population stratification. SKAT also allows for power/sample size calculations for designing for sequence association studies. (entry from Genetic Analysis Software)
Synonyms: SNP-set (Sequence) Kernel Association Test
Resource Type: software resource, software application
Keywords: gene, genetic, genomic, bio.tools
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