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URL: http://www.bcgsc.ca/platform/bioinfo/software/abyss
Proper Citation: ABySS (RRID:SCR_010709)
Description: Software providing de novo, parallel, paired-end sequence assembler that is designed for short reads. ABySS 1.0 originally showed that assembling human genome using short 50 bp sequencing reads was possible by aggregating half terabyte of compute memory needed over several computers using standardized message passing system. ABySS 2.0 is Resource Efficient Assembly of Large Genomes using Bloom Filter. ABySS 2.0 departs from MPI and instead implements algorithms that employ Bloom filter, probabilistic data structure, to represent de Bruijn graph and reduce memory requirements.
Abbreviations: ABySS
Synonyms: ABySS 1.0, ABySS 2.0
Resource Type: data processing software, sequence analysis software, software resource, data analysis software, software application
Defining Citation: PMID:19251739, DOI:10.1101/068338, DOI:10.1101/gr.214346.116
Keywords: paired-end sequence assembler, short reads, assembling human genome, large genomes, bloom filter,
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