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Resource Name
CCDB - The CyberCell Database
RRID:SCR_013423 RRID Copied      
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CCDB - The CyberCell Database (RRID:SCR_013423)
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Resource Information

URL: http://redpoll.pharmacy.ualberta.ca/CCDB

Proper Citation: CCDB - The CyberCell Database (RRID:SCR_013423)

Description: The CyberCell database (CCDB) is a comprehensive collection of detailed enzymatic, biological, chemical, genetic, and molecular biological data about E. coli (strain K12, MG1655). It is intended to provide sufficient information and querying capacity for biologists and computer scientists to use computers or detailed mathematical models to simulate all or part of a bacterial cell at a nanoscopic (10-9 m), mesoscopic (10-8 m) and microscopic (10-6 m) level. The CCDB database is actually several databases: CCDB contains quantitative proteomic, genomic and metabolic information about E. coli. CC3D contains 3D structural data for E. coli structural proteomics work CCRD contains detailed information on E. coli RNA molecules CCMD database contains quantitative information on E. coli metabolites. Each database is presented as a re-formattable synoptic table which allows users to casually browse the databases. Detailed information about each gene, protein, RNA, structure or metabolite may be obtained by clicking on the *Card button on the left column. Each card contains more than 60 fields concerning all aspects of the sequence, function or structure of a given molecule. CCDB users may also perform text searches (using the Search button), BLAST sequence searches (using the BLAST button) or conduct more detailed data extraction or relational data searches (using the Extract button).

Synonyms: CCDB

Resource Type: data or information resource, database

Keywords: e. coli, e. coli chemistry, e. coli enzyme, e. coli genetics, e. coli metabolism, e. coli metabolite, e. coli molecular biology, e. coli proteomics, e. coli rna molecule, e. coli structural proteomics, mg1655, strain k12

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University of Alberta; Alberta; Canada

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