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URL: http://proline.bic.nus.edu.sg/dedb/
Proper Citation: Drosophila melanogaster Exon Database (RRID:SCR_013441)
Description: Database on Drosophila melanogaster exons presented in a splicing graph form. Data is based on release 3.2 of the Drosophila melanogaster genome annotations available at FlyBase. The gene structure information extracted from the annotations were checked, clustered and transformed into splicing graph. The splicing graph form of the gene constructs were then used for classification of the various types of alternative splicing events. In addition, Pfam domains were mapped onto the gene structure. Users can query the database using the query page using BLAST, FlyBase Gene Name, FlyBase Gene Symbol, Pfam Accession Number and Pfam Identifier. This allows users to determine the Drosophila melanogaster homology of their gene using a BLAST search and to visualize the alternative splicing variants if any. Users can also determine genes containing a particular domain using the Pfam Accession Numbers and Identifiers.
Abbreviations: DEDB
Synonyms: DEDB - Drosophila melanogaster Exon Database, DEDB : Drosophila melanogaster Exon Database
Resource Type: database, data or information resource
Defining Citation: PMID:15581431
Keywords: exon, gene, alternative splicing, annotation, classification, cluster, domain, genome, graph, homology, protein, splicing, structure, transcript, visualize, blast
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