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URL: http://regulatorygenomicsgroup.org/chicago
Proper Citation: CHiCAGO (RRID:SCR_014941)
Description: Statistical pipeline for detecting significant chromosomal interactions in Capture Hi-C data. CHiCAGO uses a convolution background model accounting for both random Brownian collisions between chromatin fragments and technical noise. CHiCAGO then performs a p-value weighting procedure based on the expected true positive rates at different distance ranges, with scores representing soft-thresholded -log weighted p-values.
Synonyms: Capture HiC Analysis of Genomic Organisation, Capture HiC Analysis of Genomic Organization, CHiCAGO: Capture HiC Analysis of Genomic Organisation
Resource Type: data processing software, data analysis software, software toolkit, software resource, software application
Defining Citation: PMID:27306882
Keywords: capture hi-c, capture hi-c data, chic, brownian collisions, chromatin, p-value weighting, genomic organization, genome, statistical analysis, bio.tools
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