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URL: https://github.com/tanghaibao/jcvi/wiki/ALLMAPS
Proper Citation: ALLMAP (RRID:SCR_021120)
Description: Software tool for computing scaffold ordering that maximizes colinearity across collection of maps including genetic, physical or comparative maps into final chromosome build. Robust scaffold ordering based on multiple maps. ALLMAPS is robust against common mapping errors, and generates sequences that are maximally concordant with input maps. Used in building high quality genome assemblies.
Resource Type: software resource
Defining Citation: DOI:10.1186/s13059-014-0573-1
Keywords: Computing scaffold ordering, colinearity across map collection maximization, final chromosome build, robust scaffold ordering, multiple maps, common mapping errors, genome assemblies
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