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URL: https://github.com/jtamames/SqueezeMeta
Proper Citation: SqueezeMeta (RRID:SCR_021821)
Description: Software tool as fully automated pipeline for metagenomic analysis. Used for metagenomics covering all steps of analysis. Features several characteristics including co-assembly procedure or co-assembly of unlimited number of metagenomes via merging of individual assembled metagenomes, both with read mapping for estimation of abundances of genes in each metagenome. Includes binning and bin checking for retrieving individual genomes.
Resource Type: data processing software, data analysis software, software resource, software application
Defining Citation: DOI:10.3389/fmicb.2018.03349
Keywords: automated metagenomics pipeline, metagenomics analysis steps, metagenomic analysis
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Source: SciCrunch Registry
