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URL: https://github.com/wildrootlab/SHARCQ
Proper Citation: SHARCQ (RRID:SCR_022498)
Description: Software tools to register histological section images and cell count locations to mouse brain atlas. Semi automated workflow and GUI for automated brain slice histology alignment, registration, and cell quantification. Used to explore Allen Mouse Brain Atlas, register asymmetric slice images to atlas using manual input, and analyze region of interest data by registering locations of fluorescently labeled cells to standardized regions of Atlas.
Synonyms: Slice Histology Alignment, and Cell Quantification, Registration
Resource Type: software toolkit, software resource
Defining Citation: PMID:35396257
Keywords: OpenBehavior, atlas registration, brain mapping, cell-type, slicing, histology, cell quantification, automated, brain atlas, mice
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