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URL: https://github.com/bkntr/brainways
Proper Citation: Brainways (RRID:SCR_024402)
Description: Open source software that automatically registers coronal slices and quantifies fluorescent markers. Python based, AI registration algorithm for slice matching to the Waxholm rat atlas. Slice quantification can be trained on any atlas, which allows use for other subjects such as mice, zebrafish, and humans. AI-based software for registration and analysis of fluorescent markers on coronal brain slices.
Resource Type: data processing software, software resource, image analysis software, software application
Defining Citation: DOI:10.1101/2023.05.25.542252
Keywords: OpenBehavior, slice quantification, register coronal slices, quantify fluorescent markers, slice matching to atlas, registration and analysis of fluorescent markers, coronal brain slices,
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