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URL: https://scimap.xyz
Proper Citation: scimap (RRID:SCR_024751)
Description: Software toolkit for analyzing spatial molecular data. Underlying framework is generalizable to spatial datasets mapped to XY coordinates. Package uses anndata framework making it easy to integrate with other popular single-cell analysis toolkits. It includes preprocessing, phenotyping, visualization, clustering, spatial analysis and differential spatial testing. Python based implementation efficiently deals with large datasets of millions of cells.
Resource Type: software resource, software application, software toolkit, data analysis software, data processing software, data visualization software
Keywords: Python, spatial single cell analysis, spatial datasets, analyzing spatial molecular data,
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